Plot a violin plot
Python code to plot a violin plot using matplotlib and seaborn.
Posts by Category
plots
Plot a volcano plot
Python code to plot a volcano plot with up and down regulated genes highlighted using matplotlib and seaborn.
Plot a volcano plot with disease genes highlighted
Python code to plot a volcano plot with disease genes highlighted using matplotlib and seaborn.
Plot grouped bar plot with two subplots
Python code to plot a grouped bar plot with two subplots using matplotlib and seaborn.
Plot Venn diagram using venn3
Python code to plot a Venn diagram using venn3 package from matplotlib.
macOS
Create a shortcut for showing your terminal shortcuts
Quickly show all your terminal shortcuts using a single command to help you keep track of them all.
Create a shortcut for connecting to your remote server through terminal
Instead of constantly writing out the SSH command to connect to remove servers, create an alias for it.
Customize Zsh shell prompt
This tutorial includes how to customize the command line prompt and colorize the output of the ls command.
coding
Store multiple dataframes in a Python dictionary
Use Python dictionaries to store and process multiple related dataframes where the keys describe the dataframes and make your code more human readable, short...
Show package versions in Jupyter
How to print package versions in the current environment in Jupyter
writing
Convert PubMed .nbib files to .ris citation files
Sometimes we can only download a citation from PubMed but it cannot be readily imported into some of the common citation mangers because it is a .nbib file, ...
bioinformatics
Create color-coded SNP BED from VCF
Use python to create a color-coded variant BED file where SNP from each allele are a unique color from a VCF file.